grasp
v0.3.0b1
Basic Usage
GRASP Console Script
Library (API Documentation)
Table Columns
GRASP Table Query Reference
Indices and tables
grasp
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Index
A
|
C
|
D
|
E
|
F
|
G
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H
|
I
|
L
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N
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O
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P
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R
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S
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U
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W
A
alias (grasp.tables.PhenoCats attribute)
(grasp.tables.Phenotype attribute)
C
category (grasp.tables.PhenoCats attribute)
chrom (grasp.tables.SNP attribute)
collapse_dataframe() (in module grasp.query)
columns (grasp.tables.SNP attribute)
,
[1]
config (in module grasp.config)
CONFIG_FILE (in module grasp.config)
ConservPredTFBS (grasp.tables.SNP attribute)
CreationDate (grasp.tables.SNP attribute)
D
dbSNPClinStatus (grasp.tables.SNP attribute)
dbSNPfxn (grasp.tables.SNP attribute)
dbSNPinfo (grasp.tables.SNP attribute)
dbSNPMAF (grasp.tables.SNP attribute)
dbSNPvalidation (grasp.tables.SNP attribute)
display_columns() (grasp.tables.SNP method)
display_snp_columns() (in module grasp.info)
display_study_columns() (in module grasp.info)
E
EqtlMethMetabStudy (grasp.tables.SNP attribute)
F
find_intersecting_phenotypes() (in module grasp.query)
G
get_columns() (grasp.tables.SNP method)
get_phenotype_categories() (in module grasp.info)
get_phenotypes() (in module grasp.info)
get_population_flags() (in module grasp.info)
get_populations() (in module grasp.info)
get_session() (in module grasp.db)
get_snp_columns() (in module grasp.info)
get_snps() (in module grasp.query)
get_studies() (in module grasp.query)
get_study_columns() (in module grasp.info)
get_variant_info() (grasp.tables.SNP method)
(in module grasp.query)
grasp.config (module)
grasp.db (module)
grasp.info (module)
grasp.query (module)
grasp.ref (module)
grasp.tables (module)
H
HumanEnhancer (grasp.tables.SNP attribute)
HUPfield (grasp.tables.SNP attribute)
hvgs_ids (grasp.tables.SNP attribute)
,
[1]
I
id (grasp.tables.PhenoCats attribute)
(grasp.tables.Phenotype attribute)
(grasp.tables.Platform attribute)
(grasp.tables.Population attribute)
(grasp.tables.SNP attribute)
InGene (grasp.tables.SNP attribute)
init_config() (in module grasp.config)
init_config_interactive() (in module grasp.config)
initialize_database() (in module grasp.db)
InLincRNA (grasp.tables.SNP attribute)
InMiRNA (grasp.tables.SNP attribute)
InMiRNABS (grasp.tables.SNP attribute)
int (grasp.tables.PhenoCats attribute)
(grasp.tables.Phenotype attribute)
(grasp.tables.Platform attribute)
(grasp.tables.Population attribute)
(grasp.tables.SNP attribute)
intersect_overlapping_series() (in module grasp.query)
L
LastCurationDate (grasp.tables.SNP attribute)
LSSNP (grasp.tables.SNP attribute)
N
NearestGene (grasp.tables.SNP attribute)
NHLBIkey (grasp.tables.SNP attribute)
O
ORegAnno (grasp.tables.SNP attribute)
P
paper_loc (grasp.tables.SNP attribute)
PhenoCats (class in grasp.tables)
Phenotype (class in grasp.tables)
phenotype (grasp.tables.Phenotype attribute)
phenotype_cats (grasp.tables.SNP attribute)
phenotype_desc (grasp.tables.SNP attribute)
Platform (class in grasp.tables)
platform (grasp.tables.Platform attribute)
PolyPhen2 (grasp.tables.SNP attribute)
PopFlag (class in grasp.ref)
Population (class in grasp.tables)
population (grasp.tables.Population attribute)
(grasp.tables.SNP attribute)
population_id (grasp.tables.SNP attribute)
pos (grasp.tables.SNP attribute)
pval (grasp.tables.SNP attribute)
R
RNAedit (grasp.tables.SNP attribute)
S
SIFT (grasp.tables.SNP attribute)
SNP (class in grasp.tables)
snp_loc (grasp.tables.SNP attribute)
snpid (grasp.tables.SNP attribute)
snps (grasp.tables.PhenoCats attribute)
str (grasp.tables.PhenoCats attribute)
(grasp.tables.Phenotype attribute)
(grasp.tables.Platform attribute)
(grasp.tables.Population attribute)
(grasp.tables.SNP attribute)
studies (grasp.tables.PhenoCats attribute)
(grasp.tables.Phenotype attribute)
(grasp.tables.Platform attribute)
study (grasp.tables.SNP attribute)
study_id (grasp.tables.SNP attribute)
study_snpid (grasp.tables.SNP attribute)
U
UniProt (grasp.tables.SNP attribute)
W
write_config() (in module grasp.config)
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